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GeneSpring Scripts Library

Contribute a Script
Have a GeneSpring script you wrote that others could use? Please upload it and we will post it here!

1. Importing SOFT Files (Python)

If you are unable to import files directly from GEO website, you can download the SOFT files from GEO website and use this script to import the files in GeneSpring.
Download script | Usage Instructions (pdf file)

2. Affymetrix miRNA data files and TargetScan Analysis (Python)

To perform target scan data analysis for Affymetrix miRNA data.
Download script | Usage Instructions (pdf file)

3. R script for LIMMA's availability in GX 11 (R)

R Script to call the R LIMMA package from GeneSpring GX11 and return a list of differentially expressed genes.
Download script | Usage Instructions (pdf file)

4. Z-score calculation (Python)

Script for Z-score transformation
Download script | Usage Instructions (pdf file)

5. Affymetrix experiment : Probe-level (Python)

To perform a probe-level analysis for Affymetrix instead of Probeset level.
Download script | Usage Instructions (pdf file)

6. Genotype Frequency (Python)

To calculate Genotype Frequency for Genome Wide Association studies.
Download script | Usage Instructions (pdf file)

All the above scripts are tested in GeneSpring version 11.5