GeneSpring > Support > User Guides

User Guides

Do you need help with installing or activating GeneSpring? Read the user guides below or contact support.

Installation FAQ/ Guides


GeneSpring Desktop: Installation | GeneSpring Desktop: Activation | Floating/ Shared: Installation and Activation |
Moving licenses between desktops by Surrendering Licenses | Upgrading from GX 9 or Higher Versions | Installation & Activation FAQs | | Switching between Shared License and Individual License (pdf, 279 KB)

User Manuals


GeneSpring GX 12.5 - User Manual (pdf, 33 MB)
GeneSpring GX 12.5 - Quick Start Guide (pdf, 2.7 MB)

GeneSpring NGS 12.5 - User Manual (pdf, 32 MB)

GeneSpring - Installation Guide (pdf, 2.4 MB)
GeneSpring - Data Update Guide (pdf, 283 KB)

Tech Notes

Comparison of GX 9/10/11 with GX 7.3.1 Implementation: Statistical Analysis (pdf, 1 MB)
This document presents the differing analysis comparisons between GeneSpring GX 7.3.1 and GeneSpring GX 9/10/11

Comparison of GX 9/10/11 with GX 7.3.1 Implementation: Normalized Values (pdf, 1 MB)
This document presents a detailed comparison of the normalized values resulting from the Median Shift and Baseline transformation to median method in GeneSpring GX 9/10/11 and the Per Chip: to median and Per Gene: to median method of GeneSpring GX 7.3.1. The effects of differences on downstream analysis are also presented

Comparison of GX 9/10/11 with GX 7.3.1 Implementation: RMA Probe Summarization (pdf, 1 MB)
This document contains all of the comparable features and options for RMA probe summarization and normalization in GeneSpring GX 7.3.1 and 9/10/11. It details the subtle differences in probe summarization and normalization using RMA for Affymetrix gene expression data, and also describe the steps involved in both versions

Comparison of GX 9/10/11 with GX 7.3.1 Implementation: GCRMA Probe Summarization (pdf, 1 MB)
This document contains all of the comparable features and options for GCRMA probe summarization and normalization in GeneSpring GX 7.3.1 and 9/10/11. It details the subtle differences in probe summarization and normalization using GCRMA for Affymetrix gene expression data, and also describe the steps involved in both versions.

Note: Advisory on End of Support for GX version 7
Support for GeneSpring GX version 7 has now ended. Please see the advisory here